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In addition, it is also an ideal model organism of xs Lepidoptera. Because silkworm is se to rear and could produce large amount of mutation, it is second to fruit fly as a model organism in insect genetics study. Over these years, the "old" creature is becoming a new hot spot in genetic research. Many important traits sx silkworm are complex quantitative traits, such as whole cocoon weight and cocoon shell weight, etc. To locate their positions on chromosome and estimate their contribution to the variation of trait is a key step for positional cloning and follow-up utilization Pittel xx x sex those genes. With the development of modern molecular biology, it has become possible to dissect the genetic mechanism of quantitative Pihtel and to identify the associated genes Pittel xx x sex their interacting network by co-segregation analysis of molecular markers Pitttel a mapping population based on specific genetic model connecting QTL genotype with a phenotype of interest.

Since the draft sequence of silkworm genome [ 1 ] was reported, genetic research of silkworm has been greatly spurred and many linkage-maps have been constructed with various molecular makers, such as random amplified polymorphic DNAs RAPDsamplified fragment length polymorphisms AFLPsselective amplification of DNA fragments SADFsmicrosatellites also known as simple sequence repeats, SSRs and expressed sequence tags ESTs [ 2 - 6 ]. Meanwhile, many statistical models were developed for mapping QTLs, such as the interval mapping IM method [ 7 ] and the composite interval mapping CIM method [ 8 ].

Along with increasing evidence supporting the claim that epistatic and QTL-environment interactions are usually involved in the genetic variation of complex trait [ 9 - 11 ], several complicated mapping models were developed to analyze epistatic effects [ 12 - 18 ]. A few years later, the MCIM was extended for other designed populations [ 19 ] and improved in searching strategy and estimating QTL parameters [ 16 ]. Parallel to these frequentist methods, Bayesian approaches have also been proposed for QTL mapping of complex traits [ 1720 - 24 ]. Recently, there are several new Bayesian methods developed for mapping QTLs underlying dynamic traits [ 25 ], ordinal traits [ 26 ], multiple traits [ 27 - 30 ], expression data [ 31 ], and gene frequency data [ 32 ], and for multiple inbreed lines designs [ 33 ].

Although there are a large number of QTLs reported in other species, relatively fewer QTL mapping studies are performed in silkworm [ 634 - 37 ], which in part result from the fact that the current models and corresponding analysis methods are not appropriate for the silkworm. Silkworm has a particular characteristic called female achiasmata where meiosis occurs with no crossover between homologous chromosome pairs.

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